Requesting a deposit

Go to Invoicing → All invoices and click New Invoice.
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Add your client and invoice details.
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Click Request deposit.
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On the deposit panel, set the requested deposit amount by scrolling the bar or entering a flat amount, then click Done. The Deposit due field will change to Upon receipt, payable upon receipt. Or you can change it to No due date.
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Attach any relevant files and click Ready to send. The invoice will show as DEPOSIT REQUESTED.

Open the invoice by going to Invoicing > All invoices.
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Click Record a payment.
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Enter the details and click Save. Invoice status updates to DEPOSIT PAID.

Set the number of days for the 'Balance Due' period.
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Click Send for balance to send the remaining balance invoice to the client, or if you don't need to resend it, click Options → Mark as sent.

Once the outstanding balance is paid, open the invoice and click Record a payment.
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The invoice history will then show the invoice has been paid in full.